The detailed program of the CBBM2014 conference can be downloaded here.
| Stream | Session | Time | Speaker | Title |
|---|---|---|---|---|
| chair: Jacek Blazewicz | ||||
| I | 09:00 - 09:50 | Eric Westhof | Constraints and Limits Due to Base Tautomerism in Ribosome Decoding Fidelity | |
| I | 09:50 - 10:15 | Michal Startek | TRANScendence: a Web-Based Transposon Mining and Activity Chronology Reconstruction Tool | |
| I | 10:15 - 10:40 | Eva Lee | Strategies for Predicting the Immunity of Vaccines | |
| chair: Ryszard W. Adamiak | ||||
| A | II | 11:00 - 11:25 | Kamil Kwarciak | Tabu Search Algorithm for Classical and Isothermic DNA Sequencing by Hybridization with Partial Information about Repetitions |
| A | II | 11:25 - 11:50 | Klaus Ecker | Graphlet Method for Improving the Prediction of Functionally Related Genes |
| A | II | 11:50 - 12:15 | Liana Amaya Moreno | Exploring Genetic Networks with Time-Discrete Dynamics |
| A | II | 12:15 - 12:40 | Marcin Radom | A Petri Net Based Model of Interleukin-18 Involvement in Atherosclerosis |
| chair: Piotr Formanowicz | ||||
| B | II | 11:00 - 11:25 | Giulia Fiscon | A New Greedy Randomized Procedure for the Feature Selection Problem |
| B | II | 11:25 - 11:50 | Michal Kierzynka | Graph Construction for the Whole Genome Assembly Problem |
| B | II | 11:50 - 12:15 | Wojciech Frohmberg | New Approach to De Novo Assembly of a Long Genome |
| B | II | 12:15 - 12:40 | Marek Chlopkowski | High-Order Statistical Compressor for Long-Term Storage of DNA Sequencing Reads |
| chair: Klaus Ecker | ||||
| III | 14:00 - 14:50 | Katarzyna J. Purzycka | RNAComposer. Challenges in Modelling Three-Dimensional Structures of Large RNAs | |
| III | 14:50 - 15:15 | Tomasz Ratajczak | RNAlyzer - a Web Server for Computational Quality Evaluation of RNAs | |
| III | 15:15 - 15:40 | Tomasz Zok | An Algorithm to Extract RNA Secondary Topology from the 3D Structure | |
| chair: Aleksandra Swiercz | ||||
| A | IV | 16:00 - 16:25 | Anna Gogolinska | Petri Nets Formalism Facilitates Analysis of Complex Structural Data |
| A | IV | 16:25 - 16:50 | Shabbar Naqvi | Modelling Classification of Breast Cancer Grading with Type-II Fuzzy Sets and Spectral Data |
| A | IV | 16:50 - 17:15 | Adam Kozak | A Role of Hemojuvelin in Iron Metabolism Modeled and Analyzed by Petri Net Approach |
| chair: Paola Bertolazzi | ||||
| B | IV | 16:00 - 16:25 | Agnieszka Mickiewicz | AmiRNA Designer - a New Method of Artificial miRNA Design |
| B | IV | 16:25 - 16:50 | Natalia Szostak | Sorting Signals Targeting mRNA into Hepatic Extracellular Vesicles |
| B | IV | 16:50 - 17:15 | Celia Cintas | Automatic Landmarking App for Bioanthropology |
| Stream | Session | Time | Speaker | Title |
|---|---|---|---|---|
| chair: Giovanni Felici | ||||
| V | 09:00 - 09:50 | Giuseppe Lancia | 20 Years of Haplotyping: an Overview | |
| V | 09:50 - 10:15 | Luigi De Giovanni | A Column Generation Approach for Pure Parsimony Haplotyping | |
| V | 10:15 - 10:40 | Emanuel Weitschek | Rule Based Analysis of Genomic Sequences: a Viral Case Study | |
| chair: Marta Szachniuk | ||||
| A | VI | 11:00 - 11:25 | Maria C. De Cola | Orderly Colored Paths for the RNA Assignment Problem in 3D NMR Spectra |
| A | VI | 11:25 - 11:50 | Mehmet S. Apaydin | Automating the Usage of Unambiguous NOEs in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments |
| A | VI | 11:50 - 12:15 | Rupak Pal | Modeling Conformational Preferences of Modified Uridines with Polarizable Force Fields |
| chair: Piotr Lukasiak | ||||
| B | VI | 11:00 - 11:25 | Rafal Jakubowski | Towards Efficient Docking of Chemical Compounds into Protein Cavities |
| B | VI | 11:25 - 11:50 | Mehmet Tardu | Structure Based Drug Design for SIRT6 |
| B | VI | 11:50 - 12:15 | Seref Gul | Designing Small Organic Molecules to Regulate Circadian Clock in Mammals |
| Stream | Session | Time | Speaker | Title |
|---|---|---|---|---|
| chair: Metin Turkay | ||||
| VII | 09:00 - 09:50 | Marek Figlerowicz | Copy Number Variations in Plant Genomes | |
| VII | 09:50 - 10:15 | Giovanni Felici | Optimal Discretization of Continuous Features for Mining Gene Expression Data | |
| VII | 10:15 - 10:40 | Valentina Fustaino | Integrated Analysis of DNA Copy Number and Gene Expression Data in Lung Cancer Models of Resistance to Targeted Therapy | |
| chair: Pawel Wojciechowski | ||||
| A | VIII | 11:00 - 11:25 | Tomasz Prejzendanc | ModeLang - Controlled Natural Language for Describing Viral Infection Models |
| A | VIII | 11:25 - 11:50 | Marta Kulik | Structure and Electrostatics Based Analysis of Ribosomal RNA Complexes with Aminoglycosides |
| A | VIII | 11:50 - 12:15 | Malgorzata Szelag | In Silico Comparative Modeling of STAT Proteins as a Novel Approach in Finding Specific Compounds of Functional Inhibition |
| A | VIII | 12:15 - 12:40 | Gerhard-Wilhelm Weber | Reconstruction of Gene-Environment Networks Under Uncertainty |
| chair: Ceyda Oguz | ||||
| B | VIII | 11:00 - 11:25 | Daniele Soria | Breast Cancer Classification: from Consensus Clustering to Fuzzy Logic |
| B | VIII | 11:25 - 11:50 | Martin Riedel | Classification of Salmonella Serovars Based on Laser-Diffuse-Light-Images Using Learning Vector Quantizers |
| B | VIII | 11:50 - 12:15 | Weronika Wronowska | Computational Modeling of Sphingolipid Metabolism in Cancer and Neurodegeneration |
| B | VIII | 12:15 - 12:40 | Piotr Gawron | A Tool for Visualization and Analysis of Molecular Networks on the Example of Parkinson’s Disease |
